Publication

All my publications can be found on (researchgate) or (pubmed).

  • Maren Büttner^, Zhichao Miao^, F Alexander Wolf, Alvis Brazma, Sarah A Teichmann, Fabian J Theis (2017) Assessment of batch-correction methods for scRNA-seq data with a new test metric (under review, equal contribution)
  • Carapito R, Konantz M, Paillard C, Miao Z, et. al. (2017) SRP54 mutations cause syndromic neutropenia with Shwachman-Diamond-like features. J Clin Invenst pii: 92876. doi: 10.1172/JCI92876.
  • Miao Z*, Westhof E* (2017) RNA structure: Advances and assessment of 3D structure prediction. Annu Rev Biophys. 46:483-503. (corresponding author paper)
  • Miao Z*, et. al (2017) RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme. RNA, doi:10.1261/rna.060368.116. (corresponding author paper)
  • Miao Z*, Cao Y (2016) Quantifying side-chain conformational variations in protein structure. Scientific Reports, 6, 37024; doi: 10.1038/srep37024. (corresponding author paper)
  • Liu J^, Miao Z^, Li L, Xiao Z, Cao Y (2016) DRSP: a structural database for single residue substitutions in PDB. Progress in Biochemistry and Biophysics, 43(8): 810-816. (equal contribution)
  • Miao Z*, Westhof E (2016) RBscore&NBench: a high-level web server for nucleic acid binding residues prediction with a large-scale benchmarking database. Nucleic Acids Res, 44(W1):W562-7. (corresponding author paper)
  • Miao Z, Westhof E (2015) A large-scale assessment of nucleic acids binding site prediction programs. Plos Comp Biol, 11(12): e1004639. doi: 10.1371/journal.pcbi.1004639.
  • Miao Z, Westhof E (2015) Prediction of nucleic acid binding probability in proteins: a neighboring residue network based score. Nucleic Acids Res, 43(11):5340-51.
  • Miao Z, Adamiak RW, Blanchet MF …, Westhof E (2015) RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures. RNA, 21(6):1066-84.
  • Miao Z, Cao Y, Jiang T (2014) Modeling of protein side-chain conformations with RASP. Methods Mol Biol, 1137:43-53. link (in the book of “Protein Structure Prediction 3rd ed.”, cited 202 times)
  • Anokhina M, Bessonov S, Miao Z, Westhof E, Hartmuth K, Lührmann R.(2013) RNA structure analysis of human spliceosomes reveals a compact 3D arrangement of snRNAs at the catalytic core. EMBO J, 32(21):2804-18.
  • Miao Z, Cao Y and Jiang T (2011) RASP: Rapid modeling of protein side-chain conformations Bioinformatics, 27 (22):3117-3122.
  • Cao Y, Song L, Miao Z, Hu Y, Tian L, Jiang T (2011) Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation Bioinformatics, 27, 785-790.

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