Overview

Datasets from RNA-Puzzles
RNA-Puzzles dataset
+ raw submission
+ normalized format
RNA-Puzzles Normalized submissions
RNA structure formatting tools
RNA-Puzzles Normalization
rna-pdb-tools
RNA structure comparison metrics
RMSD
Deformation Profile
Interaction Network Fidelity
Mean of Circular Quantities
P value
LCS-TA
RNAQUA
Clash score

Authors

This resource is maintained by:

Chichau Miau

Marcin Magnus

Maciej Antczak

Marta Szachniuk

Usage

Detail usage of the tools can be found in each of the github. Related posts are also available on this site.

Citation

  • RNA-Puzzles toolkit: A computational resource of RNA 3D structure benchmark datasets, assessment metrics and structure manipulation tools. (to be released)

  • Miao, Zhichao, et al. “RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.” RNA 23.5 (2017): 655-672.

  • Miao, Zhichao, et al. “RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.” Rna (2015).

  • Cruz, José Almeida, et al. “RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.” Rna 18.4 (2012): 610-625.

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