About
Overview
| Datasets from RNA-Puzzles |
|---|
| RNA-Puzzles dataset |
| + raw submission |
| + normalized format |
| RNA-Puzzles Normalized submissions |
| RNA structure formatting tools |
|---|
| RNA-Puzzles Normalization |
| rna-pdb-tools |
| RNA structure comparison metrics |
|---|
| RMSD |
| Deformation Profile |
| Interaction Network Fidelity |
| Mean of Circular Quantities |
| P value |
| LCS-TA |
| RNAQUA |
| Clash score |
Authors
This resource is maintained by:
Usage
Detail usage of the tools can be found in each of the github. Related posts are also available on this site.
Citation
RNA-Puzzles toolkit: A computational resource of RNA 3D structure benchmark datasets, assessment metrics and structure manipulation tools. (to be released)
Miao, Zhichao, et al. “RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.” RNA 23.5 (2017): 655-672.
Miao, Zhichao, et al. “RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.” Rna (2015).
Cruz, José Almeida, et al. “RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.” Rna 18.4 (2012): 610-625.