Basic Assessment Metrics

The basic metrics of RNA 3D structure comparison include:

• Root Mean Square Deviation (RMSD)
• P value
• Deformation Index
• Interaction Network fidelity
  • this metric can be measured by different types of contacts, including:
  • all contacts
  • Waston-Crick interaction
  • non-Waston-Crick interaction
  • stacking

All of these metrics have been implemented in Basic Assess Metrics (author: Chichau)